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Noncoding DNA
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#	Item
61	Downloaded from www.genome.org on June 14, 2007 Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data David C. King, James Taylor, Ying Zhang, Yong Cheng, Heather A. Lawson, Joel Mart Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2007-06-14 10:57:01 DNA Bioinformatics Genomics Noncoding DNA Human genome Gene Promoter UCSC Genome Browser Sequence alignment Biology Genetics Gene expression
62	Article Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes Adam Siepel,1,6 Gill Bejerano,1 Jakob S. Pedersen,1 Angie S. Hinrichs,1 Minmei Hou,3 Kate Rosenbloom,1 Hiram Clawson,1 John Spieth Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2005-08-16 12:02:10 DNA RNA Gene expression Bioinformatics Noncoding DNA Intron Non-coding RNA Ultra-conserved element MicroRNA Genetics Biology Philosophy of biology
63	Downloaded from www.genome.org on December 5, 2006 Experimental validation of predicted mammalian erythroid cis -regulatory modules Hao Wang, Ying Zhang, Yong Cheng, Yuepin Zhou, David C. King, James Taylor, Francesca C Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2006-12-05 10:26:51 DNA Genetics Molecular biology Noncoding DNA GATA2 Promoter GATA1 Gene TRANSFAC Biology Gene expression Transcription factors
64	Adaptive Evolution of Digestive RNASE1 Genes in Leaf-Eating Monkeys Revisited: New Insights from Ten Additional Colobines Li Yu,* ,1 Xiao-yan Wang,1 Wei Jin,1 Peng-tao Luan,1 Nelson Ting,2 and Ya-ping Zhang ,3 1 Add to Reading List Source URL: molecular-anthro.uoregon.edu Language: English - Date: 2012-10-03 01:34:44 Gene expression Molecular biology DNA Noncoding DNA Ka/Ks ratio Evolution by Gene Duplication Gene Codon usage bias Synonymous substitution Biology Genetics Molecular evolution
65	Downloaded from www.genome.org on December 5, 2006 ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements James Taylor, Svitlana Tyekucheva, David C. King, Ross C. Hardis Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2006-12-05 10:16:00 Genetics DNA Genomics Promoter Sequence alignment Gene prediction Noncoding DNA Cis-regulatory module VISTA Biology Bioinformatics Gene expression
66	Genome Biology This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully formatted PDF and full text (HTML) versions will be made available soon. Fast-evolving non-coding sequen Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2007-06-22 11:33:32 Molecular biology Gene expression Human evolution Single-nucleotide polymorphism Human genome Conserved non-coding sequence Noncoding DNA Copy-number variation Pseudogene Biology Genetics DNA
67	Letter Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences David C. King,1,2 James Taylor,1,3 Laura Elnitski,1,2,6 Francesca Chiaromonte, Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2005-08-16 12:04:17 Bioinformatics Genomics DNA HBB Noncoding DNA Ridge UCSC Genome Browser Locus control region Gene Biology Gene expression Genetics
68	The Plant Cell, Vol. 4, [removed], October[removed]American Society of Plant Physiologists Tourist: A Large Family of Small lnverted Repeat Elements Frequently Associated with Maize Genes Thomas E. Bureau and Susan Add to Reading List Source URL: cepceb.ucr.edu Language: English - Date: 2011-06-14 14:36:49 Mobile genetic elements Insertion sequence Transposable element Direct repeat Retrotransposon Mutation Noncoding DNA Restriction enzyme DNA Biology Genetics Molecular biology
69	Proc. Natl. Acad. Sci. USA Vol. 93, pp. 8524–8529, August 1996 Genetics A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes Add to Reading List Source URL: cepceb.ucr.edu Language: English - Date: 2011-06-14 14:36:48 Molecular biology Gene expression DNA Insertion sequence Transposable element Noncoding DNA Microsatellite Retrotransposon Sequence alignment Biology Genetics Mobile genetic elements
70	Copyright  2003 by the Genetics Society of America Genome-Wide Analysis of mariner-Like Transposable Elements in Rice Reveals Complex Relationships With Stowaway Miniature Inverted Repeat Transposable Elements (MITEs Add to Reading List Source URL: cepceb.ucr.edu Language: English - Date: 2011-06-14 14:34:09 Molecular biology DNA Gene expression P element Transposable element Transposase Noncoding DNA Intron Oryza sativa Biology Genetics Mobile genetic elements

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